BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB025A07SP1|AL428314
(823 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig210 1398 0.0
>3x_Contig210
Length = 1662
Score = 1398 bits (704), Expect = 0.0
Identities = 785/813 (96%), Gaps = 2/813 (0%)
Strand = Plus / Minus
Query: 3 agacgcattaataaattcggtttctgggcggttcggaacagataactcggttaatatgaa 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 822 agacgcattaataaattcggtttctgggcggttcggaacagataactcggttaatatgaa 763
Query: 63 gaggcaactcaagttttcgagatctttgagccgatcctaatttatataaatacagtttga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 gaggcaactcaagttttcgagatctttgagccgatcctaatttatataaatacagtttga 703
Query: 123 atatggatttccatattaaagctaattttattacgagtatgtttgaatagagttacatga 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 atatggatttccatattaaagctaattttattacgagtatgtttgaatagagttacatga 643
Query: 183 acatatgtacttaccctagaataaggtagtttaagaattataagtgtgtcatcaaatcat 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 acatatgtacttaccctagaataaggtagtttaagaattataagtgtgtcatcaaatcat 583
Query: 243 caatgtctgcgaattcaacggggaacaggtcgttaggagaggggttattaccttcactag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 caatgtctgcgaattcaacggggaacaggtcgttaggagaggggttattaccttcactag 523
Query: 303 tgccactgaacagagagttgttatcgatgatgttttggttcaccatatttgattgtttca 362
||||||||||||||||||||||||||||||||||||||||||||| | |||| ||| |||
Sbjct: 522 tgccactgaacagagagttgttatcgatgatgttttggttcaccagagttgagtgtgtca 463
Query: 363 gtgcctggttgaagtcagtggtgaatgacggttctacaaaggatggcgctactccgacct 422
||||| ||| |||||||||||||| |||||| | ||||||| | ||||| ||||||||
Sbjct: 462 gtgccgggtggaagtcagtggtgattgacgggttgacaaaggttttcgctattccgacct 403
Query: 423 tctcgatgctgaatacggatggatctccgtactgtgtattagc-acttagaactgtattg 481
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 402 tctcgatgctgaatacggatggatctccgtactgtgtattagctacttagaactgtattg 343
Query: 482 gtggaatccgctggtgagttgaaatgattaccagatgccggaagtgctgtgctgttagtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 gtggaatccgctggtgagttgaaatgattaccagatgccggaagtgctgtgctgttagtt 283
Query: 542 tctgctggtgaaa-catagacttgatttgtggcgtagaagtgttgggtacatttttcgga 600
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 tctgctggtgaaaccatagacttgatttgtggcgtagaagtgttgggtacatttttcgga 223
Query: 601 tgncncngccnnntandctcattgtcataacgatgatttttgtgtatactaacggaacgt 660
|| | | || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tgtctcttccttttattctcattgtcataacgatgatttttgtgtatactaacggaacgt 163
Query: 661 tcccttctagaattgacgctcttccaacttataaatggatttgtagatgagtttgaaccg 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 tcccttctagaattgacgctcttccaacttataaatggatttgtagatgagtttgaaccg 103
Query: 721 atactcggtggctttgattccggaatattcataaagctaggagttatagatagaacttcg 780
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 102 atactcggtggctttgattccggaatatccataaagctaggagttatagatagaacttcg 43
Query: 781 acgcytcgtacgctgtccgtatcaaagccatat 813
|||| ||||||||||||||||| ||||||||||
Sbjct: 42 acgcttcgtacgctgtccgtataaaagccatat 10
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4893
Number of Sequences: 1807
Number of extensions: 4893
Number of successful extensions: 33
Number of sequences better than 1.0e-20: 1
length of query: 823
length of database: 10,358,551
effective HSP length: 16
effective length of query: 807
effective length of database: 10,329,639
effective search space: 8336018673
effective search space used: 8336018673
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.8 bits)